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Computational design and molecular dynamics simulations suggest the mode of substrate binding in ceramide synthases

Nat Commun. 2023-04; 
Iris D Zelnik, Beatriz Mestre, Jonathan J Weinstein, Tamir Dingjan, Stav Izrailov, Shifra Ben-Dor, Sarel J Fleishman, Anthony H Futerman
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Proteins, Expression, Isolation and Analysis … in a pcDNA3.1+ vector by GenScript after modifying and optimizing the coding sequence for use with a mammalian expression system (http://www.genscript.com/gene_synthesis.html). … Get A Quote

摘要

Until now, membrane-protein stabilization has relied on iterations of mutations and screening. We now validate a one-step algorithm, mPROSS, for stabilizing membrane proteins directly from an AlphaFold2 model structure. Applied to the lipid-generating enzyme, ceramide synthase, 37 designed mutations lead to a more stable form of human CerS2. Together with molecular dynamics simulations, we propose a pathway by which substrates might be delivered to the ceramide synthases.

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