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Analytical Ultracentrifugation Detects Quaternary Rearrangements and Antibody-Induced Conformational Selection of the SARS-CoV-2 Spike Trimer

Int J Mol Sci. 2023-10; 
Giuditta Guerrini, Dora Mehn, Francesco Fumagalli, Sabrina Gioria, Mattia Pedotti, Luca Simonelli, Filippo Bianchini, Davide F Robbiani, Luca Varani, Luigi Calzolai
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Custom DNA/RNA Oligos … (+) by GenScript; the sequence contains proline substitutions at residues 986 and 987 (S-2P… in Expi293F cells (ThermoFisher, Monza, Italy), purified from the cell supernatants 6 days … Get A Quote

摘要

Analytical ultracentrifugation (AUC) analysis shows that the SARS-CoV-2 trimeric Spike (S) protein adopts different quaternary conformations in solution. The relative abundance of the "open" and "close" conformations is temperature-dependent, and samples with different storage temperature history have different open/close distributions. Neutralizing antibodies (NAbs) targeting the S receptor binding domain (RBD) do not alter the conformer populations; by contrast, a NAb targeting a cryptic conformational epitope skews the Spike trimer toward an open conformation. The results highlight AUC, which is typically applied for molecular mass determination of biomolecules as a powerful tool for detecting functionally r... More

关键词

AUC, SARS-CoV-2, analytical ultracentrifugation, antibody, conformation, sedimentation, spike, trimer